PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000052.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 144aa    MW: 15787 Da    PI: 9.4856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000052.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-181666255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y GVr ++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a++ ++g
  Itr_sc000052.1_g00006.1 16 QYVGVRKRP-WGKYAAEIRDSTRNG--LRVWLGTFDSAEEAALAYDQAALLMRG 66
                             699******.**********44465..***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-271574IPR001471AP2/ERF domain
CDDcd000182.18E-261674No hitNo description
SuperFamilySSF541713.14E-211675IPR016177DNA-binding domain
SMARTSM003809.4E-341680IPR001471AP2/ERF domain
PROSITE profilePS5103221.0481674IPR001471AP2/ERF domain
PfamPF008471.3E-121766IPR001471AP2/ERF domain
PRINTSPR003671.6E-91728IPR001471AP2/ERF domain
PRINTSPR003671.6E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTCKAVVDSS AKKERQYVGV RKRPWGKYAA EIRDSTRNGL RVWLGTFDSA EEAALAYDQA  60
ALLMRGPTTF LNLPLDTVRD SLKGMRCGGD KAASSPVATL KESYKRRSST SMFGGNNKRG  120
IELDKVLVLE DLGPELLDEL LSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-251375264ATERF1
3gcc_A1e-251375264ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764685.13e-54PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC88e-42ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM1B0S26e-51M1B0S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000344872e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.14e-26ethylene-responsive element binding factor 15